Top shot of Pumpkin Cottage Cheese Muffins recipe.
4.82 from 32 votes

Cottage Cheese Muffins with 6 grams of protein! I am completely obsessed with these and even my kids love them. They're light, fluffy, and every bite is SO good! I like making these protein muffins two ways: Pumpkin Chocolate Chip or Regular Chocolate Chip (and I'm giving you both recipes below). I've been making these cottage cheese muffins for years and they always turn out perfect! If you're looking to add more protein into your daily breakfasts then you'll LOVE this healthy muffin recipe.

Prep: 10 Cook: 30 Total: 40
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Cottage Cheese Muffins

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Common Questions

Can you make protein muffins without protein powder?

Absolutely! These muffins are a great way to boost protein without using protein powder. The cottage cheese provides a hefty dose of protein, so you don’t need any extra supplements to make these muffins a healthy, protein-packed treat.

What can I substitute for the pumpkin puree?

If you’re out of pumpkin or want to make these muffins at a different time of year, you can easily substitute them with mashed banana or applesauce. Both options will still give you that moist, soft texture. Just keep in mind the flavor will change a bit but in a good way!

Can cottage cheese replace oil in muffins?

Yes! Using whole milk cottage cheese can be a great substitution for oil in muffins. This gives the muffins more protein and a delicious flavor!

Cottage Cheese Muffins with 6 grams of protein! I am completely obsessed with these and even my kids love them. They’re light, fluffy, and every bite is SO good! I like making these protein muffins two ways: Pumpkin Chocolate Chip or Regular Chocolate Chip (and I’m giving you both recipes below). I’ve been making these cottage cheese muffins for years and they always turn out perfect! If you’re looking to add more protein into your daily breakfasts then you’ll LOVE this healthy muffin recipe.

Cottage Cheese Muffins Recipe: Pumpkin & Chocolate Chip

As a busy mom of 3 trying to sneak some extra protein into our everyday meals, these Cottage Cheese Muffins have been a total game-changer! For the pumpkin version, the cozy pumpkin spice flavor is perfect for fall. The chocolate chip version tastes like a total treat, but I love that they’re also full of protein thanks to the cottage cheese. This surprising secret ingredient not only adds protein, but it makes the muffins super fluffy and delicious, too!

If you loved my Viral Cottage Cheese Pancakes recipe, then you’ll love this one! The muffins turn out soft, slightly sweet, and full of that cozy pumpkin spice or chocolate chip goodness we all crave. Plus, they can be made entirely in a blender in just 10 minutes and then just 30 minutes of baking time. So easy! They’re perfect for the entire family for breakfast, snacks, or even as a grab-and-go treat.

You’ll Also Love: Cottage Cheese Egg Muffins

Close up of Pumpkin Cottage Cheese Muffin cut in half.

Cottage Cheese Muffins Recipe Ingredients

The ingredients are simple, easy to find, and the best part: protein muffins without protein powder! Here’s what you’ll need:

Pumpkin Protein Muffins

  • Cottage Cheese: Whole milk cottage cheese (opens in a new tab) works best for that rich, creamy texture, but you can use low-fat if you prefer. It’s the secret ingredient that gives these muffins a protein boost and a super light and fluffy texture!
  • Maple Syrup: Natural sweetness! I love using maple syrup because it pairs so well with pumpkin and keeps the muffins refined sugar-free. Agave syrup works great, too.
  • Vanilla Extract
  • Pumpkin Puree: Can’t have pumpkin muffins without pumpkin! Be sure to grab 100% pure pumpkin puree (opens in a new tab) (not pumpkin pie filling). Feel free to substitute with an equal amount of mashed banana or applesauce instead!
  • Eggs
  • All-Purpose Flour: You can use regular or gluten-free all-purpose flour. Whole wheat flour also works great for added nutrition, but I would only substitute half of the all-purpose flour amount and use regular flour for the rest!
  • Baking Powder/Salt
  • Pumpkin Spice: (opens in a new tab) The real star of the show! It brings in all the cozy fall flavors. Feel free to swap this with cinnamon or omit it completely for a more neutral flavor!
  • Mini Chocolate Chips: (opens in a new tab) Totally optional, but I love adding them for a little extra treat. Regular chocolate chips work great, too! My kids are big fans of the chocolatey bites in every muffin.
Ingredients for Cottage Cheese Muffins recipe.

Chocolate Chip Protein Muffins Ingredients

Not feeling the pumpkin version of these cottage cheese muffins? Here’s what you’ll need to make regular chocolate chip ones:

  • Cottage Cheese
  • Maple Syrup
  • Vanilla
  • Eggs
  • Applesauce
  • Coconut Oil
  • Baking Powder/Salt
  • Mini Chocolate Chips
Chocolate Chip Cottage Cheese Muffins on a cooling rack.

How to Make High Protein Muffins Without Protein Powder

These muffins are so easy to make, and everything comes together in just a few simple steps. You can make them entirely in a blender, (opens in a new tab) or simply blend the liquid ingredients and then fold them into the dry ingredients. Either way works great! Here’s how to make Cottage Cheese Muffins:

  1. Blend the Wet Ingredients: Start by blending the cottage cheese, maple syrup, vanilla, pumpkin puree, and eggs (or all liquid ingredients for the non-pumpkin version). The blender makes everything smooth, so there’s no weird texture from the cottage cheese—just silky creamy goodness!
  2. Mix the Dry Ingredients: In a large bowl, combine the flour, baking powder, pumpkin spice, and salt and mix JUST until combined (be careful not to overmix the batter). Another option is to gently blend the dry ingredients with the wet!
  3. Combine: Pour the wet mixture into the dry ingredients and fold everything together. Then, stir in those chocolate chips if you’re using them.
  4. Bake: Spoon the batter into a lined muffin tin, and bake at 350°F for about 25-30 minutes. You’ll know they’re ready when a toothpick comes out clean. Let them cool slightly and enjoy!

RELATED: 45+ Healthy Pumpkin Recipes

Tips

  • Use Whole Milk Cottage Cheese: I find that whole milk cottage cheese gives these muffins the best texture, but low-fat will work in a pinch.
  • Don’t Overmix: When combining the wet and dry ingredients, fold everything together gently to keep the muffins nice and fluffy. While blending them works, mixing in a bowl results in a better texture!
  • Pumpkin Spice Blend: If you’re out of pumpkin spice, you can make your own by mixing cinnamon, nutmeg, ginger, and a pinch of cloves.
  • Chocolate Chip Options: Feel free to use regular chocolate chips or even dark chocolate if you want a slightly more indulgent flavor. White chocolate chips could be great with the pumpkin spice flavors, too!

Variations for Healthy Cottage Cheese Muffins

Banana Cottage Cheese Muffins – Swap the pumpkin puree for mashed ripe bananas. You’ll need about 1/2 cup of mashed banana to replace the pumpkin. The bananas add natural sweetness, so you can reduce the maple syrup slightly if you want. These are great for banana bread lovers!

Apple Cottage Cheese Muffins – Replace the pumpkin puree with unsweetened applesauce (1/2 cup works perfectly). You can also stir in some small cubes of fresh apple for extra texture and a bit of cinnamon for more fall flavor.

Blueberry Cottage Cheese Muffins – Swap the chocolate chips in the regular cottage cheese muffins recipe for fresh or frozen blueberries. It’s that easy!

Pumpkin Walnut Protein Muffins – Try adding nuts like walnuts or pecans for extra crunch, or even a handful of dried cranberries for a seasonal twist.

Gluten-Free Protein Muffins – Just sub the all-purpose flour with your favorite gluten-free all-purpose flour blend. (opens in a new tab) I’ve tested this and they turn out great!

Cottage Cheese Muffin with chocolate chips across photo.

How to Store High Protein Muffins Without Protein Powder

Refrigerator: Store these cottage cheese muffins in an airtight container in the fridge for up to 4-5 days. To reheat, place them in the microwave for about 10-15 seconds to bring back that fresh-from-the-oven taste.

Freezer: These muffins also freeze really well! Let them cool completely, then store them in a freezer-safe bag or container for up to 3 months. When you’re ready to enjoy, just thaw them overnight in the fridge or pop them in the microwave for about 20-30 seconds until warm.

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Pumpkin protein muffins with chocolate chips.

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Top shot of Pumpkin Cottage Cheese Muffins recipe.
ServingsServes 10
4.82 from 32 votes

Cottage Cheese Muffins

Cottage Cheese Muffins with 6 grams of protein! I am completely obsessed with these and even my kids love them. They're light, fluffy, and every bite is SO good! I like making these protein muffins two ways: Pumpkin Chocolate Chip or Regular Chocolate Chip (and I'm giving you both recipes below). I've been making these cottage cheese muffins for years and they always turn out perfect! If you're looking to add more protein into your daily breakfasts then you'll LOVE this healthy muffin recipe.
Prep: 10 minCook: 30 minTotal: 40 min

Ingredients

Pumpkin Cottage Cheese Muffins

Chocolate Chip Cottage Cheese Muffins

Instructions

  1. Preheat the oven to 350 degrees F and line a muffin tin with liners.
  2. Combine the cottage cheese, maple syrup, vanilla, pumpkin puree, and eggs in a blender (or all liquid ingredients for the regular chocolate chip version).
  3. Blend until smooth.
  4. Mix it with the flour, baking powder, pumpkin spice, and salt in a large mixing bowl (or lightly blend in the dry ingredients).
  5. Fold in the chocolate chips.
  6. Spray the muffin liners with a little bit of oil and pour the batter into each one.
  7. Bake for 25-30 minutes.
  8. Let cool for a few minutes and enjoy!

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Notes

*The nutrition is calculated for the Pumpkin Cottage Cheese Muffins ingredients.
*Since the pumpkin version of this recipe doesn’t have oil in it, it’s best to spray your liners (both paper and silicone) with a little oil before adding the batter. This will keep the muffins from sticking. 

Nutrition

Serving: 1 Muffin | Calories: 175 kcal | Carbohydrates: 29 g | Protein: 6 g | Fat: 3 g | Saturated Fat: 2 g | Polyunsaturated Fat: 0.3 g | Monounsaturated Fat: 0.4 g | Trans Fat: 0.02 g | Cholesterol: 39 mg | Sodium: 213 mg | Potassium: 93 mg | Fiber: 1 g | Sugar: 13 g | Vitamin A: 1353 IU | Vitamin C: 0.5 mg | Calcium: 81 mg | Iron: 1 mg

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31 Comments

  1. Colleen

    Made the chocolate chip muffins today turned out great very tasty followed recipe exactly except replaced 1/2 cup of gluten free flour for 1/2 cup almond flour.

    1. Jar Of Lemons

      Thanks for the review, Colleen. I’m glad your substitution worked well for this muffin recipe!

  2. Chelsry

    Cont.. Oh and the cook time! 20 minutes was plenty for mine. I did 22 minutes and they were slightly over. I wish I had added the full amount of choc chips. I skimped thinking there would be a more pumpkin taste.

  3. Chelsry

    I would have loved a more deep pumpkin taste rather than the pumpkin spice taste. But they’re great otherwise.

  4. Andria

    I love this recipe, have made it multiple times. However, DO NOT use muffin liners- completely ruins the muffins, they do not come out clean. Just spray your pan with avocado oil and they’ll come out perfect. I tried to use muffin liners because I finally had them; and now I’m so bummed I did because the muffins completely stick to the liner 🙁

    1. JOL Team

      So sorry the muffin liners were frustrating for you! I used a parchment style cupcake liner when I first made this, but I have since tested it and you’re absolutely right you don’t have to use a cupcake liner as long as you spray the muffin tin. Glad you enjoyed them still!

  5. Lainey

    I made the chocolate chip version with 1/4 cup of the maple syrup. It’s very mildly sweetened and I did have to add a little milk to thin it out enough to scoop. My toddler is fully enjoying them.

    1. Jar Of Lemons

      So happy to hear this, Lainey. Thanks for the review!